In the next release (0.3.13), I’m going to change the format of the internal version number integer from 313 to 31300, for instance 31305 = 0.3.13.5. The last number represents changes on the SVN between releases and ought to be properly represented in the version number. Otherwise, it would be a pain if we had a mistake or something in one of the sub versions that needed to be worked around.
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https://bitcointalk.org/index.php?topic=1269.msg13831#msg13831